3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04127

Details:

PFam ID : PF04127

PFam Domain Description : DNA / pantothenate metabolism flavoprotein

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 1591

Average sequence length: 168.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04127	D2V9A2_NAEGR_1520_1645	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04127	D6THU1_9CHLR_305_405	100

Sequence based PCA Plot of the family - PF04127 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=1 Length=8
Motif3 Start=73 Length=11
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay