3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04123

Details:

PFam ID : PF04123

PFam Domain Description : Domain of unknown function (DUF373)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 96

Average sequence length: 334.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04123	E6N4X5_9ARCH_7_56	86.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04123	E1K655_9EURY_41_195	100

Sequence based PCA Plot of the family - PF04123 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=195 Length=8
Motif2 Start=10 Length=8
Motif3 Start=106 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay