3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04121

Details:

PFam ID : PF04121

PFam Domain Description : Nuclear pore protein 84 / 107

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 182

Average sequence length: 471.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04121	Q0D1A6_ASPTN_237_328	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04121	E9DID2_COCPS_883_1049	100

Sequence based PCA Plot of the family - PF04121 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=96 Length=8
Motif3 Start=47 Length=8
Motif4 Start=190 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay