3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04120

Details:

PFam ID : PF04120

PFam Domain Description : Low affinity iron permease

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 187

Average sequence length: 118.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04120	E1Z8V0_9CHLO_356_453	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04120	Q2K994_RHIEC_5_118	100

Sequence based PCA Plot of the family - PF04120 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay