3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04118

Details:

PFam ID : PF04118

PFam Domain Description : Dopey, N-terminal

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 126

Average sequence length: 271.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04118	B5VG36_YEAS6_10_129	87.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04118	Q6BFD6_PARTE_7_399	100

Sequence based PCA Plot of the family - PF04118 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=246 Length=17
Motif2 Start=93 Length=8
Motif3 Start=57 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay