3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04117

Details:

PFam ID : PF04117

PFam Domain Description : Mpv17 / PMP22 family

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 675

Average sequence length: 66.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04117	Q05S83_9SYNE_42_157	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04117	E3KBK9_PUCGT_171_239	100

Sequence based PCA Plot of the family - PF04117 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=27 Length=8
Motif2 Start=3 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay