3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04116

Details:

PFam ID : PF04116

PFam Domain Description : Fatty acid hydroxylase superfamily

Number of Sequence in 50% Dataset : 217

Number of Sequence in Full Dataset : 1907

Average sequence length: 115.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04116	Q05S83_9SYNE_42_157	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04116	C1MKM3_MICPC_171_314	92.7

Sequence based PCA Plot of the family - PF04116 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=135 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay