3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04115

Details:

PFam ID : PF04115

PFam Domain Description : Ureidoglycolate hydrolase

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 299

Average sequence length: 165.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04115	Q05S83_9SYNE_42_157	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04115	B8MF66_TALSN_11_314	100

Sequence based PCA Plot of the family - PF04115 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=66 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay