3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04114

Details:

PFam ID : PF04114

PFam Domain Description : Gaa1-like, GPI transamidase component

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 185

Average sequence length: 322.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04114	F0ZWQ2_DICPU_223_573	76.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04114	E5QZA4_ARTGP_327_602	100

Sequence based PCA Plot of the family - PF04114 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=138 Length=8
Motif3 Start=242 Length=8
Motif4 Start=485 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay