3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04113

Details:

PFam ID : PF04113

PFam Domain Description : Gpi16 subunit, GPI transamidase component

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 219

Average sequence length: 350.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04113	E3K7I1_PUCGT_1_82	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04113	Q3KZF1_SCHJA_13_156	100

Sequence based PCA Plot of the family - PF04113 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay