3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04112

Details:

PFam ID : PF04112

PFam Domain Description : Mak10 subunit, NatC N(alpha)-terminal acetyltransferase

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 129

Average sequence length: 142.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04112	Q6C2E4_YARLI_28_185	88.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04112	Q4PGC7_USTMA_71_271	100

Sequence based PCA Plot of the family - PF04112 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=5 Length=17
Motif3 Start=121 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay