3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04111

Details:

PFam ID : PF04111

PFam Domain Description : Autophagy protein Apg6

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 172

Average sequence length: 293.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04111	A2FQ97_TRIVA_216_277	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04111	Q5KKK1_CRYNE_119_525	100

Sequence based PCA Plot of the family - PF04111 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=283 Length=8
Motif2 Start=310 Length=8
Motif3 Start=179 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay