3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04110

Details:

PFam ID : PF04110

PFam Domain Description : Ubiquitin-like autophagy protein Apg12

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 110

Average sequence length: 82.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04110	C4JGE1_UNCRE_82_153	52.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04110	C5LW79_9ALVE_23_125	100

Sequence based PCA Plot of the family - PF04110 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=78 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay