3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04109

Details:

PFam ID : PF04109

PFam Domain Description : Autophagy protein Apg9

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 144

Average sequence length: 299.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04109	A0NAJ4_ANOGA_1_152	73.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04109	B8BXK1_THAPS_262_670	100

Sequence based PCA Plot of the family - PF04109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay