3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04108

Details:

PFam ID : PF04108

PFam Domain Description : Autophagy protein Apg17

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 83

Average sequence length: 326.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04108	Q0E3D8_ORYSJ_1_117	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04108	C5DS40_ZYGRC_7_407	100

Sequence based PCA Plot of the family - PF04108 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=109 Length=8
Motif3 Start=379 Length=11
Motif4 Start=199 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay