3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04107

Details:

PFam ID : PF04107

PFam Domain Description : Glutamate-cysteine ligase family 2(GCS2)

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 797

Average sequence length: 271.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04107	E4TUU1_MARTH_16_293	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04107	D6M281_9ACTO_1_155	100

Sequence based PCA Plot of the family - PF04107 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=166 Length=8
Motif2 Start=132 Length=8
Motif3 Start=2 Length=11
Motif4 Start=249 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay