3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04106

Details:

PFam ID : PF04106

PFam Domain Description : Autophagy protein Apg5

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 156

Average sequence length: 204.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04106	E9C7R5_9EUKA_79_306	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04106	B0DXP5_LACBS_104_349	100

Sequence based PCA Plot of the family - PF04106 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=110 Length=8
Motif2 Start=20 Length=8
Motif3 Start=171 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay