3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04104 Details: PFam ID : PF04104 PFam Domain Description : Eukaryotic and archaeal DNA primase, large subunit Number of Sequence in 50% Dataset : 100 Number of Sequence in Full Dataset : 274 Average sequence length: 233.0 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04104C1E962_MICSR_350_54393.9 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04104Q18E58_HALWD_165_40799.6 Sequence based PCA Plot of the family - PF04104 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=29 Length=8Motif2 Start=183 Length=8Motif3 Start=222 Length=8Motif4 Start=106 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF04104
PFam Domain Description : Eukaryotic and archaeal DNA primase, large subunit
Number of Sequence in 50% Dataset : 100
Number of Sequence in Full Dataset : 274
Average sequence length: 233.0
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER