3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04103

Details:

PFam ID : PF04103

PFam Domain Description : CD20-like family

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 305

Average sequence length: 130.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04103	A7S0F1_NEMVE_10_130	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04103	D3Z6Z5_MOUSE_34_104	97.6

Sequence based PCA Plot of the family - PF04103 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=11
Motif2 Start=21 Length=8
Motif3 Start=3 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay