3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04101

Details:

PFam ID : PF04101

PFam Domain Description : Glycosyltransferase family 28 C-terminal domain

Number of Sequence in 50% Dataset : 485

Number of Sequence in Full Dataset : 2113

Average sequence length: 158.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04101	A5DK24_PICGU_1_241	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04101	D4W3L3_9FIRM_18_186	100

Sequence based PCA Plot of the family - PF04101 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=29 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay