3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04100

Details:

PFam ID : PF04100

PFam Domain Description : Vps53-like, N-terminal

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 175

Average sequence length: 309.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04100	A5DK24_PICGU_1_241	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04100	D2W175_NAEGR_38_498	100

Sequence based PCA Plot of the family - PF04100 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=213 Length=8
Motif3 Start=161 Length=8
Motif4 Start=146 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay