3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04097

Details:

PFam ID : PF04097

PFam Domain Description : Nup93/Nic96

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 160

Average sequence length: 516.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04097	A2D9K7_TRIVA_190_733	73.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04097	C4JGS2_UNCRE_1_440	100

Sequence based PCA Plot of the family - PF04097 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=288 Length=8
Motif2 Start=208 Length=8
Motif3 Start=631 Length=8
Motif4 Start=310 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay