3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04096

Details:

PFam ID : PF04096

PFam Domain Description : Nucleoporin autopeptidase

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 174

Average sequence length: 135.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04096	E9H8C3_DAPPU_1_76	95

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04096	Q4P405_USTMA_1056_1215	100

Sequence based PCA Plot of the family - PF04096 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=18
Motif2 Start=121 Length=14
Motif3 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay