3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04095

Details:

PFam ID : PF04095

PFam Domain Description : Nicotinate phosphoribosyltransferase (NAPRTase) family

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 1243

Average sequence length: 214.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04095	A2ZS27_ORYSJ_169_238	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04095	D8QM03_SCHCM_180_452	99.7

Sequence based PCA Plot of the family - PF04095 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=68 Length=8
Motif2 Start=55 Length=8
Motif3 Start=18 Length=8
Motif4 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay