3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04091

Details:

PFam ID : PF04091

PFam Domain Description : Exocyst complex subunit Sec15-like

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 136

Average sequence length: 270.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04091	C1HCF1_PARBA_469_581	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04091	E2LAU2_MONPE_1_164	100

Sequence based PCA Plot of the family - PF04091 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=229 Length=8
Motif2 Start=11 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay