3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04087

Details:

PFam ID : PF04087

PFam Domain Description : Domain of unknown function (DUF389)

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 371

Average sequence length: 142.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04087	B6JY97_SCHJY_94_243	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04087	B7G7P2_PHATC_162_356	100

Sequence based PCA Plot of the family - PF04087 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=103 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay