3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04084

Details:

PFam ID : PF04084

PFam Domain Description : Origin recognition complex subunit 2

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 151

Average sequence length: 300.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04084	B7XHX0_ENTBH_91_231	86.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04084	E3JRB8_PUCGT_79_499	100

Sequence based PCA Plot of the family - PF04084 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=187 Length=8
Motif2 Start=132 Length=8
Motif3 Start=268 Length=8
Motif4 Start=54 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay