3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04082

Details:

PFam ID : PF04082

PFam Domain Description : Fungal specific transcription factor domain

Number of Sequence in 50% Dataset : 2076

Number of Sequence in Full Dataset : 5703

Average sequence length: 234.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04082	C4JWG9_UNCRE_475_625	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04082	B6H9L2_PENCW_293_364	99.7

Sequence based PCA Plot of the family - PF04082 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=96 Length=14
Motif2 Start=6 Length=8
Motif3 Start=135 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay