3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04081

Details:

PFam ID : PF04081

PFam Domain Description : DNA polymerase delta, subunit 4

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 103

Average sequence length: 117.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04081	A9TRK5_PHYPA_7_86	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04081	D6RNN8_COPC7_37_235	100

Sequence based PCA Plot of the family - PF04081 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=50 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay