3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04078

Details:

PFam ID : PF04078

PFam Domain Description : Cell differentiation family, Rcd1-like

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 132

Average sequence length: 219.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04078	A7F565_SCLS1_85_122	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04078	F2U8K3_9EUKA_140_220	100

Sequence based PCA Plot of the family - PF04078 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=180 Length=8
Motif3 Start=123 Length=8
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay