3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04077

Details:

PFam ID : PF04077

PFam Domain Description : DsrH like protein

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 213

Average sequence length: 85.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04077	A3YGA9_9GAMM_10_93	85.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04077	Q15T18_PSEA6_8_102	100

Sequence based PCA Plot of the family - PF04077 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=69 Length=8
Motif3 Start=18 Length=11
Motif4 Start=47 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay