3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04076

Details:

PFam ID : PF04076

PFam Domain Description : Bacterial OB fold (BOF) protein

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 250

Average sequence length: 100.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04076	A8LMH3_DINSH_16_101	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04076	E0T5Y5_EDWTF_1_43	99.5

Sequence based PCA Plot of the family - PF04076 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=69 Length=8
Motif3 Start=87 Length=8
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay