3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04075

Details:

PFam ID : PF04075

PFam Domain Description : Domain of unknown function (DUF385)

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 560

Average sequence length: 123.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04075	A8M0I0_SALAI_6_121	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04075	E6THX1_MYCSR_14_153	100

Sequence based PCA Plot of the family - PF04075 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=6 Length=8
Motif2 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay