3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04073

Details:

PFam ID : PF04073

PFam Domain Description : YbaK / prolyl-tRNA synthetases associated domain

Number of Sequence in 50% Dataset : 266

Number of Sequence in Full Dataset : 2594

Average sequence length: 122.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04073	C0AX62_9ENTR_1_46	73.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04073	E9AJV4_LEIME_24_191	99.8

Sequence based PCA Plot of the family - PF04073 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=151 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay