3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04072

Details:

PFam ID : PF04072

PFam Domain Description : Leucine carboxyl methyltransferase

Number of Sequence in 50% Dataset : 286

Number of Sequence in Full Dataset : 1020

Average sequence length: 172.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04072	D3S0S0_FERPA_9_91	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04072	E5BMU4_9FUSO_1_64	100

Sequence based PCA Plot of the family - PF04072 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=110 Length=8
Motif3 Start=94 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay