3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04071

Details:

PFam ID : PF04071

PFam Domain Description : Cysteine-rich small domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 103

Average sequence length: 85.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04071	D3S0S0_FERPA_9_91	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04071	D3S0S0_FERPA_9_91	99.0

Sequence based PCA Plot of the family - PF04071 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=16 Length=20
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay