3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04070

Details:

PFam ID : PF04070

PFam Domain Description : Domain of unknown function (DUF378)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 178

Average sequence length: 61.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04070	A6LXN9_CLOB8_1_62	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04070	D5EP94_CORAD_7_73	98.3

Sequence based PCA Plot of the family - PF04070 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=17
Motif2 Start=1 Length=8
Motif3 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay