3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04066

Details:

PFam ID : PF04066

PFam Domain Description : Multiple resistance and pH regulation protein F (MrpF / PhaF)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 496

Average sequence length: 54.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04066	D8LVK3_BLAHO_1_146	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04066	A6TMD6_ALKMQ_27_81	97.9

Sequence based PCA Plot of the family - PF04066 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay