3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04065

Details:

PFam ID : PF04065

PFam Domain Description : Not1 N-terminal domain, CCR4-Not complex component

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 127

Average sequence length: 204.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04065	D8LVK3_BLAHO_1_146	72.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04065	D8TZX6_VOLCA_3_149	100

Sequence based PCA Plot of the family - PF04065 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=184 Length=8
Motif2 Start=24 Length=8
Motif3 Start=102 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay