3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04064

Details:

PFam ID : PF04064

PFam Domain Description : Domain of unknown function (DUF384)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 126

Average sequence length: 57.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04064	A5AQX5_VITVI_275_321	7.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04064	A8XZT6_CAEBR_143_199	100

Sequence based PCA Plot of the family - PF04064 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=20 Length=17
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay