3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04063

Details:

PFam ID : PF04063

PFam Domain Description : Domain of unknown function (DUF383)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 143

Average sequence length: 184.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04063	A8PUS3_MALGO_109_399	74.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04063	A8XZT6_CAEBR_143_199	100

Sequence based PCA Plot of the family - PF04063 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=215 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay