3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04062

Details:

PFam ID : PF04062

PFam Domain Description : ARP2/3 complex ARPC3 (21 kDa) subunit

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 129

Average sequence length: 167.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04062	Q1WCB9_ICTPU_1_73	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04062	D8U9A2_VOLCA_1_185	100

Sequence based PCA Plot of the family - PF04062 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=90 Length=8
Motif3 Start=143 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay