3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04061

Details:

PFam ID : PF04061

PFam Domain Description : ORMDL family

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 105

Average sequence length: 127.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04061	B8BTK5_THAPS_113_270	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04061	B8BTK5_THAPS_113_270	100

Sequence based PCA Plot of the family - PF04061 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=148 Length=8
Motif3 Start=76 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay