3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04060

Details:

PFam ID : PF04060

PFam Domain Description : Nucleotide exchange factor Fes1

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 671

Average sequence length: 34.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04060	B9IGR1_POPTR_1_61	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04060	C4XS10_DESMR_87_104	98.8

Sequence based PCA Plot of the family - PF04060 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay