3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04054

Details:

PFam ID : PF04054

PFam Domain Description : CCR4-Not complex component, Not1

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 183

Average sequence length: 285.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04054	A2FBB8_TRIVA_681_1001	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04054	E7R1M6_PICAD_1867_2254	100

Sequence based PCA Plot of the family - PF04054 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=93 Length=8
Motif2 Start=295 Length=8
Motif3 Start=33 Length=8
Motif4 Start=252 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay