3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04053

Details:

PFam ID : PF04053

PFam Domain Description : Coatomer WD associated region

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 283

Average sequence length: 380.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04053	B0EL49_ENTDI_329_750	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04053	O17742_CAEEL_27_324	100

Sequence based PCA Plot of the family - PF04053 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=131 Length=8
Motif2 Start=354 Length=8
Motif3 Start=415 Length=8
Motif4 Start=499 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay