3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04052

Details:

PFam ID : PF04052

PFam Domain Description : TolB amino-terminal domain

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 438

Average sequence length: 103.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04052	E1ZH54_9CHLO_806_877	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04052	TOLB_BDEBA_27_144	100

Sequence based PCA Plot of the family - PF04052 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=14 Length=8
Motif3 Start=92 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay