3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04049 Details: PFam ID : PF04049 PFam Domain Description : Anaphase promoting complex subunit 8 / Cdc23 Number of Sequence in 50% Dataset : 62 Number of Sequence in Full Dataset : 138 Average sequence length: 142.7 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04049A8XG47_CAEBR_62_21690.1 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04049B0E0Z1_LACBS_4_185100 Sequence based PCA Plot of the family - PF04049 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=24 Length=8Motif2 Start=15 Length=8Motif3 Start=68 Length=8Motif4 Start=6 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF04049
PFam Domain Description : Anaphase promoting complex subunit 8 / Cdc23
Number of Sequence in 50% Dataset : 62
Number of Sequence in Full Dataset : 138
Average sequence length: 142.7
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER