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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04049
Details:

PFam ID : PF04049

PFam Domain Description : Anaphase promoting complex subunit 8 / Cdc23

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 138

Average sequence length: 142.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04049A8XG47_CAEBR_62_21690.1
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04049B0E0Z1_LACBS_4_185100
Sequence based PCA Plot of the family - PF04049 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=68 Length=8
Motif4 Start=6 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay