3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04045

Details:

PFam ID : PF04045

PFam Domain Description : Arp2/3 complex, 34 kD subunit p34-Arc

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 137

Average sequence length: 214.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04045	E3ML73_CAERE_303_395	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04045	Q01CA0_OSTTA_65_313	100

Sequence based PCA Plot of the family - PF04045 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=120 Length=8
Motif3 Start=225 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay