3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04042

Details:

PFam ID : PF04042

PFam Domain Description : DNA polymerase alpha/epsilon subunit B

Number of Sequence in 50% Dataset : 182

Number of Sequence in Full Dataset : 530

Average sequence length: 214.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04042	D1TWK2_YERPE_1_99	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04042	C1FGI8_MICSR_272_605	99.8

Sequence based PCA Plot of the family - PF04042 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=116 Length=8
Motif2 Start=290 Length=8
Motif3 Start=3 Length=8
Motif4 Start=313 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay